LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219332-219353
0.015
4
8mer
32510-32535
0.012
0
8mer
84888-84909
0.011
2
8mer
33158-33182
0.010
1
8mer
189804-189820
0.009
0
8mer
34618-34641
0.008
2
7mer
22559-22582
0.008
0
8mer
107609-107628
0.007
0
7mer
190714-190737
0.006
1
8mer
238855-238874
0.006
1
7mer
99003-99019
0.006
3
7mer
16196-16211
0.006
0
7mer
244063-244082
0.006
1
7mer
150319-150340
0.005
5
7mer
69309-69325
0.005
1
7mer
1075-1095
0.005
2
8mer
190390-190415
0.005
Not Conserved
7mer
184958-184973
0.005
0
8mer
190135-190160
0.004
0
7mer
136872-136895
0.004
1
7mer
106164-106183
0.004
2
7mer
66272-66288
0.004
1
7mer
102609-102629
0.004
1
7mer
32678-32697
0.004
0
8mer
190050-190075
0.003
0
7mer
128714-128733
0.003
3
7mer
196913-196932
0.003
2
8mer
189994-190019
0.003
0
8mer
189938-189963
0.003
Not Conserved
8mer
189890-189907
0.003
0
8mer
189855-189880
0.003
Not Conserved
6mer
113127-113150
0.003
12
7mer
88297-88318
0.003
1
6mer
266722-266747
0.003
0
8mer
190191-190216
0.003
Not Conserved
8mer
190029-190046
0.003
0
7mer
86074-86087
0.003
1
7mer
117420-117442
0.003
0
7mer
20029-20052
0.003
1
6mer
60604-60623
0.003
2
8mer+wobble
589-615
0.003
0
7mer
8485-8502
0.003
Not Conserved
7mer
146210-146235
0.002
1
7mer
62818-62839
0.002
Not Conserved
8mer
189973-189990
0.002
Not Conserved
7mer
121749-121773
0.002
1
6mer
130693-130718
0.002
2
6mer
87949-87967
0.002
2
6mer
180295-180317
0.002
1
6mer
77918-77932
0.002
2
7mer
234090-234109
0.002
1
6mer
86687-86706
0.002
3
7mer
226459-226472
0.002
1
6mer
69657-69680
0.002
1
6mer
111655-111673
0.002
2
6mer
89270-89289
0.002
2
6mer
49190-49209
0.002
5
6mer
217368-217393
0.002
4
6mer
186745-186766
0.002
0
6mer
167301-167328
0.002
2
7mer
49792-49817
0.002
1
6mer
78555-78571
0.002
3
6mer
115902-115921
0.002
4
6mer
30429-30446
0.002
2
6mer
109308-109333
0.001
1
7mer
242086-242107
0.001
1
6mer
74355-74370
0.001
1
6mer
82514-82531
0.001
1
6mer
187828-187850
0.001
2
6mer
141721-141739
0.001
1
6mer
133480-133488
0.001
2
6mer
262479-262496
0.001
0
6mer
217118-217137
0.001
1
6mer
35428-35449
0.001
1
6mer
237343-237354
0.001
3
6mer
259360-259374
0.001
2
6mer
53031-53054
0.001
1
6mer
254994-255011
0.001
2
6mer
30906-30926
0.001
1
6mer
49741-49753
0.001
2
6mer
73347-73371
0.001
0
6mer
115257-115277
0.001
1
6mer
25414-25438
0.001
1
6mer
163058-163077
0.001
3
6mer
179607-179632
0.001
1
6mer
124412-124438
0.001
1
6mer
185690-185717
0.001
0
6mer
45595-45608
0.001
1
6mer
208608-208633
0.001
4
6mer
3784-3811
0.001
1
6mer
228195-228209
0.001
1
6mer
232899-232918
0.001
1
6mer
664-683
0.001
1
6mer
22992-23008
0.001
1
6mer
91081-91103
0.001
1
6mer
205274-205296
0.001
1
6mer
221910-221936
0.001
1
6mer
85509-85533
0.001
2
6mer
39716-39743
0.001
0
6mer
130409-130429
0.001
3
7mer
233024-233047
0.001
0
6mer
13042-13056
0.001
3
6mer
118136-118157
0.001
2
6mer
48340-48353
0.001
1
6mer
127512-127528
0.001
1
6mer
20128-20154
0.001
4
6mer
116735-116758
0.001
4
6mer
204891-204914
0.001
1
6mer
35539-35563
0.001
1
6mer
199805-199832
0.001
1
6mer
219677-219697
0.001
0
6mer
222617-222641
0.001
1
6mer
116953-116968
0.001
1
6mer
147569-147585
0.001
0
6mer
123853-123876
0.001
0
8mer+wobble
33848-33867
0.001
1
6mer
239902-239926
0.001
1
6mer
53765-53785
0.001
1
6mer
241918-241941
0.001
1
6mer
189037-189062
0.001
0
6mer
96995-97013
0.001
1
6mer
236488-236515
0.001
1
6mer
54054-54078
0.001
Not Conserved
6mer
62881-62900
0.001
2
6mer
85700-85724
0.001
0
6mer
259862-259880
0.001
0
6mer
135123-135150
0.001
1
6mer
162877-162901
0.001
1
6mer
82548-82566
0.001
3
6mer
52147-52174
0.001
1
6mer
183069-183083
0.001
Not Conserved
6mer
200515-200537
0.001
Not Conserved
6mer
213616-213631
0.001
1
6mer
14439-14463
0.001
0
6mer
40885-40900
0.001
1
6mer
224547-224573
0.001
0
6mer
206283-206308
0.001
Not Conserved
6mer
242002-242026
0.001
Not Conserved
6mer
242031-242053
0.001
1
6mer
8491-8509
0.000
0
6mer
190264-190289
0.000
Not Conserved
6mer
190413-190428
0.000
0
6mer
189818-189837
0.000
0
6mer
234092-234117
0.000
1
AC006116.19
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591936
Biotype: sense_intronic
Gene id: ENSG00000267298
Gene Name: AC006116.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
199-219
0.302
1
KCNQ1OT1
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-114
0.059
1
9mer
30287-30312
0.034
0
9mer
7327-7334
0.014
0
9mer
33415-33433
0.013
0
9mer
35505-35528
0.011
0
8mer
29098-29124
0.011
0
7mer
54179-54201
0.009
7
7mer
89746-89772
0.007
4
8mer
52377-52401
0.006
1
7mer
30094-30109
0.005
0
7mer
28852-28872
0.004
0
7mer
34411-34421
0.004
0
7mer
27565-27584
0.004
0
7mer
77084-77110
0.004
1
7mer
19666-19693
0.004
0
7mer
22456-22478
0.004
0
7mer
45923-45942
0.003
2
7mer
84337-84356
0.003
1
6mer
46729-46753
0.003
6
8mer+wobble
29713-29737
0.003
0
6mer
67683-67710
0.003
3
6mer
66386-66412
0.003
5
6mer
13572-13598
0.002
1
6mer
47808-47823
0.002
4
8mer
38798-38808
0.002
0
7mer
66811-66838
0.002
Not Conserved
6mer
39975-39989
0.002
0
6mer
49945-49968
0.002
2
6mer
64135-64158
0.002
1
8mer+wobble
70714-70740
0.002
1
6mer
19110-19136
0.002
1
6mer
34972-34993
0.002
0
6mer
31094-31114
0.002
0
6mer
42316-42336
0.002
1
6mer
64469-64491
0.002
2
7mer
30014-30027
0.002
0
6mer
3647-3661
0.002
1
6mer
16753-16774
0.002
1
6mer
38924-38928
0.001
0
6mer
74758-74781
0.001
0
6mer
18456-18469
0.001
1
6mer
4403-4419
0.001
0
6mer
63889-63907
0.001
1
6mer
48040-48054
0.001
1
6mer
54522-54546
0.001
1
6mer
55227-55250
0.001
1
6mer
32534-32557
0.001
0
6mer
60920-60946
0.001
1
6mer
38281-38295
0.001
0
6mer
38815-38838
0.001
0
6mer
34362-34366
0.001
Not Conserved
6mer
64034-64045
0.001
1
6mer
32200-32227
0.001
0
6mer
90091-90114
0.001
1
6mer
64759-64782
0.001
Not Conserved
6mer
60858-60875
0.001
0
6mer
74628-74646
0.000
1
XLOC_009651
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021052
Biotype: transcript isomorph
Gene id: XLOC_009651
Gene Name: XLOC_009651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
80-97
0.233
1
LINC01410
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427509
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
579-596
0.209
0
RP11-352B15.2
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-243
0.150
0
7mer
400-424
0.030
0
6mer
940-960
0.009
0
RP11-780O24.2
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531918
Biotype: antisense
Gene id: ENSG00000255523
Gene Name: RP11-780O24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-410
0.124
0
7mer
187-206
0.042
0
RP11-475A13.2
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2360-2385
0.106
0
8mer
1284-1307
0.055
1
CTC-459F4.3
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2252-2272
0.130
0
7mer
1216-1234
0.015
0
6mer
532-554
0.009
0
6mer
1124-1144
0.006
0
RP11-677I18.3
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527594
Biotype: antisense
Gene id: ENSG00000254433
Gene Name: RP11-677I18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-312
0.156
9
XLOC_007710
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2287-2304
0.156
0
LINC01410
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
575-592
0.154
0
RP11-764K9.1
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2287-2304
0.153
0
XXbac-BPG254F23.7
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458375
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-173
0.150
0
RP11-799D4.4
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588697
Biotype: antisense
Gene id: ENSG00000266947
Gene Name: RP11-799D4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-417
0.145
1
TTTY20
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000434487
Biotype: antisense
Gene id: ENSG00000232808
Gene Name: TTTY20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-223
0.144
0
RP11-958F21.3
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578129
Biotype: lincRNA
Gene id: ENSG00000265552
Gene Name: RP11-958F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-465
0.136
8
6mer
211-236
0.003
0
CTD-2542C24.8
hsa-miR-205-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598137
Biotype: lincRNA
Gene id: ENSG00000268326
Gene Name: CTD-2542C24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-444
0.138
0
LINC01474
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453787
Biotype: lincRNA
Gene id: ENSG00000236849
Gene Name: LINC01474
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-394
0.077
1
8mer
451-470
0.057
1
LOC101926889
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109994.1
Biotype: antisense
Gene id: NR_109994.1 (gene)
Gene Name: LOC101926889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
601-626
0.111
1
7mer
408-424
0.016
1
6mer
1401-1417
0.004
1
6mer
1159-1176
0.002
1
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